Kategorie:Applications

This category contains all documentation of applications offered by MetaCentrum sorted alphabetically. MetaCentrum estimates every year the usage of installed applications. Frequently used applications are supported in case of need by buying of new licences or often installation of new versions. The most used applications are:

• Mathematical and Statistical Modelling software – Matlab, Maple, Mathematica and grid-Mathematica, R
• Computational Chemistry & Molecular Modelling software – Amber, Gaussian/GaussView, Gromacs, MolPro, Turbomole, WIEN2k
• Structural Biology and Bioinformatics – MrBayes, CS-Rosetta
• DNA Sequencing and Analysis – CLC Genomics Workbench, Geneious
• Technical and Material Simulations – Ansys (Fluent + CFX + Mechanical + HPC), OpenFOAM
• Development Tools and Environments – Intel CDK, PGI CDK, TotalView

Related topics

• If you would like to install a new application, see tutorial How to install an application or contact User support.
• For list of applications sorted by field of interest, see Categorized list of applications.
• Some applications are available as a Singularity image -- can be listed in /cvmfs/singularity.metacentrum.cz/NGC -- Singularity
• If your application uses Java, read about running an application on JAVA platform.
• To learn more about the modular system, see How to use application modules.
• On separate page you can find applications with GUI.
• If you need to use selected application with GUI, you might want to make your life easier with Ondemand service or using the Kubernetes - Rancher.
• If you need to use parallelization, see the list of applications supporting MPI.
• If you wish to write new application page, hold to the scheme as shown in Example of application page.