OCOCO

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Description

OCOCO: the first online consensus caller. Call genomic consensus directly from a SAM/BAM stream. http://arxiv.org/abs/1605.09070

Availability

Version from November 2016. Freely available to users. Modules:

ococo-2016-11

License

The MIT License

Use

Initialize environment with command:

module add ococo-2016-11

Now you can run OCOCO simply by executing the command

ococo

To get usage information, you can run

ococo --help

Documentation

Documentation is at https://github.com/karel-brinda/ococo

Program manager

meta@cesnet.cz

Homepage

https://github.com/karel-brinda/ococo