OCOCO
Description
OCOCO: the first online consensus caller. Call genomic consensus directly from a SAM/BAM stream. http://arxiv.org/abs/1605.09070
License
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of ococo and load default version of ococo as
module avail ococo/ # list available modules module load ococo # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail ococo
and choose explicit version you want to use.
Now you can run OCOCO simply by executing the command
ococo
To get usage information, you can run
ococo --help
Documentation
Documentation is at https://github.com/karel-brinda/ococo