CLCgenomicsWB
Description
CLC Genomics Workbench is a powerful solution developed by scientists for scientists to analyze and visualize next generation sequencing (NGS) data. Its cutting-edge technology incorporates unique features and algorithms that are widely used by scientific leaders in industry and academia to overcome bottleneck challenges associated with data analysis.
License
CLC Genomics Workbench is freely available to all MetaCentrum/Cerit-SC users based on an institutional license.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of CLCgenomicsWB and load default version of CLCgenomicsWB as
module avail CLCgenomicsWB/ # list available modules module load CLCgenomicsWB # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail CLCgenomicsWB
and choose explicit version you want to use.
The latest version 22.0.2 (module CLCgenomicsWB-22.0.2) includes all available Template workflows and Plugins. Please, let us know if some tools need to be updated or downloaded.
Users must provide their own license for commercial plugins, such as CLC Genome Finishing Module, CLC Microbial Genomics Module, CLC MLST Module and CLC Single Cell Analysis Module.
Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.