GlimmerHMM

From MetaCentrum
Jump to navigation Jump to search

Description

GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single).

Availability

version 3.0.4


Use

module add glimmerhmm-3.0.4 
 

glimmerhmm_linux_x86_64


Documentation

https://ccb.jhu.edu/software/glimmerhmm/

Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://ccb.jhu.edu/software/glimmerhmm/