NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR.
The application is available in the following versions:
- 2.10 (module
namd-2.10for CPU version and module
namd-2.10-gpufor GPU version)
- 2.7 (module
- 2.7b1 (module
Load module ("module add namd-2.10").
module add namd-2.10 namd2
User have to agree with licence