NAMD

Description

NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR.

Availability

The application is available in the following versions:

• 2.10 (module namd-2.10 for CPU version and module namd-2.10-gpu for GPU version)
• 2.7 (module namd-2.7)
• 2.7b1 (module namd-2.7)

Use

Load module ("module ad namd-2.10").

Documentation

NAMD 2.10 NAMD Wiki

Licence

User have to agree with licence

Supported platforms

Linux

Program administrator

meta@cesnet.cz

Homepage

http://www.ks.uiuc.edu/Research/namd/