NAMD
Z MetaCentrum
Obsah
Description
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR.
Availability
The application is available in the following versions:
- 2.10 (module
namd-2.10
for CPU version and modulenamd-2.10-gpu
for GPU version) - 2.7 (module
namd-2.7
) - 2.7b1 (module
namd-2.7
)
Use
Load module ("module ad namd-2.10").
Documentation
Licence
User have to agree with licence
Supported platforms
Linux