BWA-mem2
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Description
BWA-mem2 is the next version of the BWA-mem algorithm in BWA. It produces alignment identical to bwa and is ~1.3-3.1x faster depending on the use-case, dataset and the running machine.
License
The MIT License.
Usage
module avail bwa-mem2/ # list available modules module load bwa-mem2 # load (default) module
bwa-mem2 version # Will show the software version bwa-mem2 index -p <prefix_name> <in_reference.fasta> bwa-mem2 mem <prefix_name> <reads_1.fq/fa> <reads_2.fq/fa> -t $PBS_NUM_PPN > out.sam
Documentation
Online documentation BWA-mem2 usage.