RNA

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Description

rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search for better accuracy. A graphical user interface is provided for not command-line-skilled users and an MPI-based version for cluster is in development.

Note: program has ceased development. There is a rewritten application instead called ERNE which is also available in MetaCentrum.

Availability

Program is actually available in version 1.0.

Module versions:

mrNA-1.0-gcc
mrNA-1.0-intel

Intel version should be faster, GCC version maybe more stable.

Licence

GNU/GPL v3 licence

Use

Initialize environment by command

module add mrNA-1.0-intel

This makes available the path to program binaries.

Documentation

Documentation is available in file /software/mrNA-1.0/gcc/share/doc/rna/README.

Program administrator

meta@cesnet.cz

Homepage

http://iga-rna.sourceforge.net/