MCL
Description
The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs.
License
GNU GPL 3; If you use MCL-edge software in your research, please cite it as you would cite a journal or a book.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of mcl and load default version of mcl as
module avail mcl/ # list available modules module load mcl # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail mcl
and choose explicit version you want to use.
Available tools
- mcl
- mcxload
- mcxarray
- mcx
- clm
- mcxrand
Documentation
http://www.micans.org/mcl/index.html?sec_software