PHASE is a program for reconstructing haplotypes from population data.
The program is available in version 2.1.1.
The program is available under following open source license:
Add the module using following command: 'module add phase-2.1.1'.
Now you can run the program using 'phase <filename.inp> <filename.out> <number of iterations> <thinning interval> <burn-in>'.
The documentation itself (in PDF):
You can also find this PDF in the folder '/software/phase/2.1.1/doc'.