PHASE

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Popis

PHASE is a program for reconstructing haplotypes from population data.

Availability

The program is available in version 2.1.1.

License

The program is available under following open source license:

https://github.com/stephens999/phase/blob/master/license.md

Use

Add the module using following command: 'module add phase-2.1.1'.

Now you can run the program using 'phase <filename.inp> <filename.out> <number of iterations> <thinning interval> <burn-in>'.

Documentation

Official website:

http://stephenslab.uchicago.edu/phase/download.html

The documentation itself (in PDF):

http://stephenslab.uchicago.edu/assets/software/phase/instruct2.1.pdf

You can also find this PDF in the folder '/software/phase/2.1.1/doc'.

Program manager

meta@cesnet.cz

Homepage

http://stephenslab.uchicago.edu/phase/download.html