Hisat

Description

HISAT is a fast and sensitive spliced alignment program.

Availability

Program is available in version 0.1.7, 2.0.2 and 2.0.5 (successor to both HISAT and TopHat2).

Use

module add hisat-0.1.7, hisat2-2.0.2 or hisat2-2.0.5
hisat -h
hisat2 -h

Documentation

• https://github.com/infphilo/hisat/blob/master/MANUAL
• http://ccb.jhu.edu/software/hisat2/manual.shtml

Homepage

http://ccb.jhu.edu/software/hisat2/index.shtml

Licence

HISAT2 is distributed under the GPLv3 license

Program manager

meta@cesnet.cz