Scan for matches

Description

Scan_for_matches is a utility written in C for locating patterns in DNA or protein FASTA files.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of scanmatches and load default version of scanmatches as

module avail scanmatches/ # list available modules
module load scanmatches   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail scanmatches

and choose explicit version you want to use. Then run as

scan_for_matches

Documentation

http://blog.theseed.org/servers/2010/07/scan-for-matches.html

Homepage

http://blog.theseed.org/servers/2010/07/scan-for-matches.html