Conda - modules

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Description

Conda is an open-source package management system and environment management system that runs on Windows, macOS and Linux (available in Metacentrum). Conda quickly installs, runs and updates packages and their dependencies. Conda easily creates, saves, loads and switches between environments on the computer. In Metacentrum Conda is used for managing of python tools.

Availability

module conda-modules-py35 - Conda version 4.8.3

module conda-modules-py37 - Conda version 4.8.3

Licence

Conda is released under the 3-clause BSD license.

Use

All Metacentrum users are eligible to use Conda modules and installed environments.

#load initial Conda module
module add conda-modules-py37
#check the list of installed environments
conda env list
#acrivate selected environment
conda activate busco_4.0.6
#use application
busco --help
#quit and leave environment
conda deactivate

list of available environments in both Conda modules:

antismash
busco_4.0.6
deepsignal
dekupl
flair2
hamster
infernal
medaka
mitos
nanoplot
openMM
orgasm
picrust
picrust2
py2713
py37
pyclone
pyseg
pyseg_system
qiime2-2020.2
tepid
tombo


Note: Of course, all Metacentrum users are eligible to install tools via Conda in their home directory. The following manual can be very useful.

Documentation

https://github.com/conda/conda

Homepage

https://docs.conda.io/en/latest/

Program manager

meta@cesnet.cz