LDDist is a Perl module implemente in C++ that enables the user to calculate LogDet pair-wise genetic distances based on amino acid as well as DNA/RNA sequences. Site-to-site rate heterogeneity is handled by excluding invariant sites and/or bu assigning sites to different rate classes that are treated separately.
Program is available in version 1.3.2
Initialize enviroment ("module add lddist-1.3.2") and run "PLD.pl".
PAL (Perl Artistic License)
Documentation is available on WWW server.