LDDist

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Description

LDDist is a Perl module implemente in C++ that enables the user to calculate LogDet pair-wise genetic distances based on amino acid as well as DNA/RNA sequences. Site-to-site rate heterogeneity is handled by excluding invariant sites and/or bu assigning sites to different rate classes that are treated separately.

Availability

Program is available in version 1.3.2

Use

Initialize enviroment ("module add lddist-1.3.2") and run "PLD.pl".

License

PAL (Perl Artistic License)

Documentation

Documentation is available on WWW server.

Program administrator

meta@cesnet.cz

Homepage

URL: http://artedi.ebc.uu.se/molev/software/LDDist.html