ERNE (Extended Randomized Numerical alignEr) is a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads.
Version 1.2. Freely available for every user.
erne-1.2 erne-1.4-gcc erne-1.4-intel
The difference between -gcc and -intel version is in used build environment. Intel version should be faster, GCC version is more verified so possibly more stable.
GNU/GPL v3, see http://gplv3.fsf.org/ for details.
Example of module initialization:
module add erne-1.2
After initialization are available program binaries and module openmpi-1.6.
Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page How to compute/Parallelization.