ERNE

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Description

ERNE (Extended Randomized Numerical alignEr) is a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads.

Availability

Version 1.2. Freely available for every user.

Available modules:

erne-1.2
erne-1.4-gcc
erne-1.4-intel

The difference between -gcc and -intel version is in used build environment. Intel version should be faster, GCC version is more verified so possibly more stable.

Licence

GNU/GPL v3, see http://gplv3.fsf.org/ for details.

Use

Example of module initialization:

module add erne-1.2

After initialization are available program binaries and module openmpi-1.6.

Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page How to compute/Parallelization.

Documentation

http://erne.sourceforge.net/manual.php

Program manager

meta@cesnet.cz

Homepage

http://erne.sourceforge.net