ERNE
Description
ERNE (Extended Randomized Numerical alignEr) is a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads.
License
GNU/GPL v3, see http://gplv3.fsf.org/ for details.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of erne and load default version of erne as
module avail erne/ # list available modules module load erne # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail erne
and choose explicit version you want to use.
Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page Parallelization.
Documentation
http://erne.sourceforge.net/manual.php