Angsd

From MetaCentrum
Jump to: navigation, search

Description

ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

Availability

Versions freely available to all users:

angsd-0.920

Licence

Free for users.

Use

You can load the module via the command

module add angsd-0.920
angsd --help

This makes available the path to the program binaries, libraries and manual pages.

Documentation

Documentation is available on http://www.popgen.dk/angsd/index.php/Quick_Start or angsd --help

Program manager

meta@cesnet.cz

Homepage

http://www.popgen.dk/angsd/index.php/ANGSD