RapMap is a testing ground for ideas in lightweight / quasi / pseudo transcriptome alignment. That means that, at this point, it is somewhat experimental and there are no guarantees on stability / compatibility between commits. Currently, RapMap is a stand-alone quasi-mapper that can be used with other tools. It is also being used as part of Sailfish and Salmon. Eventually, the hope is to create and stabilize an API so that it can be used as a library from other tools.
module add rapmap-0.2.0
This makes available the path to the program binaries.
GNU GPL 3