Phenix

From MetaCentrum
Jump to navigation Jump to search

Description

PHENIX is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.

License

PHENIX is available without cost to users for non-profit work (typically academic and non-profit institutions). Details about license can be found at https://www.phenix-online.org/license/.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of phenix and load default version of phenix as

module avail phenix/ # list available modules
module load phenix   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail phenix

and choose explicit version you want to use.

  • phenix-1.12-rosetta – module with support of Rosetta-3.7 software. Allows hybrid calculations.
  • phenix-1.12
  • phenix-1.10.1

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

https://www.phenix-online.org/documentation/

Homepage

https://www.phenix-online.org/