Orthograph
Description
Orthology prediction using a Graph-based, Reciprocal Approach with Profile Hidden Markov models.
License
GNU GPL v3, https://www.gnu.org/copyleft/gpl.html
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of orthograph and load default version of orthograph as
module avail orthograph/ # list available modules module load orthograph # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail orthograph
and choose explicit version you want to use.
Documentation
Official website: https://github.com/mptrsen/Orthograph
Official documentation:
A manual page containing a description of all options is in the doc /software/orthograph/0.6.1/doc directory. It can be read using man -l orthograph.man