PyMOL

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Description

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies.

Availability

Version 1.7.6 and 1.8.2.1. Freely available to all users.

Licence

CNRI Python Licence

Use

Load and run example:

module add pymol-1.7.6-gcc
module add pymol-1.8.2.1-gcc

Notice: Both versions were compiled with Python 2, so it can be used with Python 2.

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

Documentation is available at http://www.pymolwiki.org/index.php/Main_Page .

Program manager

meta@cesnet.cz

Homepage

http://sourceforge.net/projects/pymol/