Rins
Description
RINS (Rapid Identification of Non-human Sequence) is a software tool that detects non-human sequences (virus or other micobails) from human RNA-seq data This tool could also be used to detect non-X species's sequence from X RNA-seq data if corresponding dataset is provided
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of rins and load default version of rins as
module avail rins/ # list available modules module load rins # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail rins
and choose explicit version you want to use. Then run "rins.pl". Config.txt file is required and available in directory /software/rins/1.0/rins/
module add rins rins.pl -h
Documentation
http://khavarilab.stanford.edu/tools-1/#tools