Rins

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Description

RINS (Rapid Identification of Non-human Sequence) is a software tool that detects non-human sequences (virus or other micobails) from human RNA-seq data This tool could also be used to detect non-X species's sequence from X RNA-seq data if corresponding dataset is provided

Availability

Program is available in version 1.0

Use

Initialize enviroment ("module add rins") and run "rins.pl". Config.txt file is required and available in directory /software/rins/1.0/rins/

module add rins
rins.pl -h

Documentation

http://khavarilab.stanford.edu/tools-1/#tools

Program manager

meta@cesnet.cz

Homepage

http://khavarilab.stanford.edu/tools-1/#tools