Plink

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Description

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data).

Availability

Versions freely available to all users:

plink-1.07
plink-1.90

Licence

GNU GENERAL PUBLIC LICENSE v3

Use

You can load the module via the command

module add plink-1.90
plink --help

This makes available the path to the program binaries, libraries and manual pages.

Documentation

Documentation is available on https://www.cog-genomics.org/plink/1.9/data or you can type plink --help

Program manager

meta@cesnet.cz

Homepage

https://www.cog-genomics.org/plink2