Ray

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Description

Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard.

License

GNU General Public licence, version 3 (GNU GPL 3).

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of ray and load default version of ray as

module avail ray/ # list available modules
module load ray   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail ray

and choose explicit version you want to use.

Documentation

http://denovoassembler.sourceforge.net/manual.html

Homepage

http://denovoassembler.sourceforge.net/index.html