Ray
Description
Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard.
License
GNU General Public licence, version 3 (GNU GPL 3).
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of ray and load default version of ray as
module avail ray/ # list available modules module load ray # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail ray
and choose explicit version you want to use.
Documentation
http://denovoassembler.sourceforge.net/manual.html