FMRIB Software Library (FSL)

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Description

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

License

Before using FSL in the MetaCentrum, you have to agree with the licence.

Before accepting the license, please read its full contents at the official FSL wiki.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of fsl and load default version of fsl as

module avail fsl/ # list available modules
module load fsl   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail fsl

and choose explicit version you want to use.

Parallel usage of some tools can be accomplished by deassembling data into smaller units. After computation of each unit can be the results composed together.

Documentation

http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Support

Homepage

http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/