Novoalign
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Description
An aligner for single-ended and paired-end reads from the Illumina Genome Analyser. Novoalign finds global optimum alignments using full Needleman-Wunsch algorithm with affine gap penalties.
License
Free for non commercial use.
Usage
{{module_avail_add|name=novoalign}
Documentation
http://www.novocraft.com/documentation/novoalign-2/novoalign-reference-manual/