AYB
Description
AYB is a base caller for the Illumina Genome Analyzer, using an explicit statistical model of how errors occur during sequencing to produce more accurate reads from the raw intensity data.
License
GNU General Public Licence version 3
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of ayb2 and load default version of ayb2 as
module avail ayb2/ # list available modules module load ayb2 # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail ayb2
and choose explicit version you want to use.
ayb -h
Documentation
https://www.ebi.ac.uk/goldman-srv/AYB/man/ayb-recal.1.html or in directory /software/AYB/2.0/man/ayb.1.txt