GenomeThreader

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Description

GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.


Availability

Version 1.7.0 is freely available for all users.

Use

module add genomethreader-1.7.0
gth --help 

Licence

GenomeThreader is available free of charge.

Program manager

meta@cesnet.cz

Manual

http://genomethreader.org/doc/gthmanual.pdf

Homepage

http://genomethreader.org/