Merqury
Description
Evaluate genome assemblies with k-mers and more Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a set of tools for this purpose.
Licence
Public
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of conda-modules and load default version of conda-modules as
module avail conda-modules/ # list available modules module load conda-modules # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail conda-modules
and choose explicit version you want to use. Then run as
conda activate merqury merqury.sh
Documentation
https://github.com/marbl/merqury