Chimera

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Description

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles.

License

free fo non comercial use (http://www.cgl.ucsf.edu/chimera/license.html)

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of chimera and load default version of chimera as

module avail chimera/ # list available modules
module load chimera   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail chimera

and choose explicit version you want to use.

Documentation

https://www.cgl.ucsf.edu/chimera/docindex.html

Homepage

https://www.cgl.ucsf.edu/chimera/