LINKS

From MetaCentrum
Jump to navigation Jump to search

Description

LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, other draft genomes, etc). It is also used to scaffold contig pairs linked by ARCS/ARKS.

Availability

version 1.8.7


Use

module add links-1.8.7 
 

LINKS --help


Documentation

https://github.com/bcgsc/LINKS


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/bcgsc/LINKS