Squat

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Description

SQUAT stands for Sequencing QUality Assessment Tool. It allows users to examine their sequencing data and determine if they are truly representative of the original specie based on data assessments before and after genome assemblies.

The tool aligns sequencing reads against the assembly with BWA and generates one pre-assembly and one post-assembly report at the end of the analysis.

Availability

version-1.0


Use

module add squat-1.0

squat.sh


Documentation

https://github.com/luke831215/SQUAT


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/luke831215/SQUAT