Cdbfasta

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Description

fast indexing and retrieval of fasta records from flat file databases.

License

GNU/GPL v2 licence

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of cdbfasta and load default version of cdbfasta as

module avail cdbfasta/ # list available modules
module load cdbfasta   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail cdbfasta

and choose explicit version you want to use.

Documentation

http://cdbfasta.sourceforge.net/.

Homepage

http://cdbfasta.sourceforge.net/