Nanopore sequencing - data analysis tools

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Description

Nanopore sequencing is a third generation approach used in the direct sequencing of biopolymers specifically, polynucleotides in the form of DNA or RNA.

Availability

Here you can find a list of available applications for nanopore data processing.

  • Nanopolish - A software package for signal-level analysis of Oxford Nanopore sequencing data
  • Guppy - Basecaller
  • Tombo - Analysis of modified nucleotides
  • Python tools available via a module called Python modules, e.g.
    • NanoComp
    • NanoPlot
    • NanoStat
    • NanoFilt
    • ont_fast5_api

If you can't find an application suitable for your pipeline, contact the user support or you can try to install it on your own

Program manager

meta@cesnet.cz