MAFFT

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Description

MAFFT is a fast multiple sequence alignment program for aminoacids and nucleotids. According to number of sequences and demands to time and accuracy it offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.

Availability

  • Module mafft-7.273: MAFFT version 7.273, 64-bit, Intel compiler
  • Module mafft-7.029: MAFFT version 7.029, 64-bit

Use

module add mafft-7.029
mafft [arguments] input > output

Documentation

http://mafft.cbrc.jp/alignment/software/manual/manual.html

License

Free for academic users

Supported platforms

amd64

Program administrator

meta@cesnet.cz

Homepage

http://mafft.cbrc.jp/alignment/software/
http://mafft.cbrc.jp/alignment/software/source.html