FastStructure
Obsah
Description
FastStructure is an algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x. Here, we summarize how to setup this software package, compile the C and Cython scripts and run the algorithm on a test simulated genotype dataset.
Availability
Appliacation is available for all MetaCentrum users. Versions:
- 1.0 in module
faststructure-1.0
Use
Steps to run the application
module add faststructure-1.0 structure.py
The application can be run by command python structure.py
according to the official fastStructure manual. In MataCentrum you can run it only by structure.py
, because we made the file runnable. If you would like to use original syntax, you should type whole path to the file (python /software/faststructure/1.0/structure.py
).
Documentation
Documentation can be found at http://rajanil.github.io/fastStructure/
Licence
The MIT License (MIT)