Ltrdigest
Description
Software tool for identification and annotation of characteristic sequence features of LTR retrotransposons in predicted candidates. In particular, LTRdigest can be used to find protein domains, polypurine tracts and primer binding sites.
License
http://genometools.org/license.html
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of ltrdigest and load default version of ltrdigest as
module avail ltrdigest/ # list available modules module load ltrdigest # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail ltrdigest
and choose explicit version you want to use.
Documentation
http://www.zbh.uni-hamburg.de/fileadmin/gi/LTRdigest/ltrdigestman.pdf