Orthofinder

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Description

OrthoFinder is a fast, accurate and comprehensive analysis tool for comparative genomics. It finds orthologues and orthogroups infers rooted gene trees for all orthogroups and infers a rooted species tree for the species being analysed. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format.

Availability

Version 2.0.0

Use

Using the application:

$ module add orthofinder-2.0.0

Documentation

Official website:

https://github.com/davidemms/OrthoFinder

Official documentation:

https://github.com/davidemms/OrthoFinder#running-orthofinder

Original paper:

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0721-2

License

GNU GPL v3

https://www.gnu.org/copyleft/gpl.html

Program administrator

meta@cesnet.cz

Homepage

https://github.com/davidemms/OrthoFinder