Phycas

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Description

Phycas is a Python application for carrying out phylogenetic analyses. Phycas is also a C++ and Python library that can be used to create new applications or to extend the current functionality.

Availability

Version 1.2.0. Freely available for every user.

Licence

GNU GPL v2, see http://www.gnu.org/licenses/gpl-2.0.html for details.

Use

Initialize module with command:

module add phycas

After initialization is available a program binary phycas. Just run

phycas

to enter the Phycas shell. Logout can be done via ctrl-d shortcut.

Documentation

Documentation is available at http://phylo.bio.ku.edu/phycas/manual.pdf or in /software/phycas-1.2.0/phycas/docs directory. Some examples are in the Phycas installation directory at /software/phycas-1.2.0/phycas/phycas/Examples.

Program manager

meta@cesnet.cz

Homepage

http://hydrodictyon.eeb.uconn.edu/projects/phycas/index.php/Phycas_Home