DataAnalysis

Description

The GS Data Analysis Software package includes the tools to investigate complex genomic variation in samples including de novo assembly, reference guided alignment and variant calling, and low abundance variant identification and quantification.

• GS De Novo Assembler - Point-and-click genome and transcriptome assembly
• GS Reference Mapper - Reference-guided alignment and variation detection for resequencing projects
• GS Amplicon Variant Analyzer - High-sensitivity variation detection from amplicon-based samples

License

http://454.com/contact-us/agreement.asp

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of dataanalysis and load default version of dataanalysis as

module avail dataanalysis/ # list available modules
module load dataanalysis   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail dataanalysis

and choose explicit version you want to use.

Documentation

http://454.com/products/analysis-software/index.asp

Homepage

http://www.454.com http://454.com/products/analysis-software/index.asp