DataAnalysis

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Description

The GS Data Analysis Software package includes the tools to investigate complex genomic variation in samples including de novo assembly, reference guided alignment and variant calling, and low abundance variant identification and quantification.

  • GS De Novo Assembler - Point-and-click genome and transcriptome assembly
  • GS Reference Mapper - Reference-guided alignment and variation detection for resequencing projects
  • GS Amplicon Variant Analyzer - High-sensitivity variation detection from amplicon-based samples

Availability

Currently in version 2.6

Use

Add modul ("module add dataanalysis-2.6") and than you can run programs (e.g. newbler, gsAssembler, gsAmplicon) see "ls /software/dataanalysis-2.6/bin/" for list of programs.

Documentation

http://454.com/products/analysis-software/index.asp

Licence

http://454.com/contact-us/agreement.asp

Supported platforms

Linux

Program manager

meta@cesnet.cz

Homepage

http://www.454.com http://454.com/products/analysis-software/index.asp