The GS Data Analysis Software package includes the tools to investigate complex genomic variation in samples including de novo assembly, reference guided alignment and variant calling, and low abundance variant identification and quantification.
- GS De Novo Assembler - Point-and-click genome and transcriptome assembly
- GS Reference Mapper - Reference-guided alignment and variation detection for resequencing projects
- GS Amplicon Variant Analyzer - High-sensitivity variation detection from amplicon-based samples
Currently in version 2.6
Add modul ("module add dataanalysis-2.6") and than you can run programs (e.g. newbler, gsAssembler, gsAmplicon) see "ls /software/dataanalysis-2.6/bin/" for list of programs.