QualiMap

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Description

Qualimap is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

Availability

version 11-12-16

Use

module ad qualiMap-11_12-16 This makes available the path to the program binaries.

to enable graphic interface, option -X must be used when connecting via ssh e.g ssh -X meta_user@skirit.metacentrum.cz (see https://wiki.metacentrum.cz/wiki/Remote_desktop for details)


Documentation

http://qualimap.bioinfo.cipf.es/doc_html/index.html


Licence

Licensed under the Apache License, Version 2.0

Program manager

meta@cesnet.cz

Homepage

http://qualimap.bioinfo.cipf.es