Blat

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Description

Blat is an alignment tool like BLAST, but it is structured differently. On DNA, Blat works by keeping an index of an entire genome in memory. Thus, the target database of BLAT is not a set of GenBank sequences, but instead an index derived from the assembly of the entire genome.

Availability

blat-suite-34 
blat-suite-35

Use

module add blat-suite-35

This makes available the path to the program binaries.

Documentation

http://www.blat.net/examples/


Licence

http://www.blat.net/?docs/license.txt

Program manager

meta@cesnet.cz

Homepage

https://genome.ucsc.edu/cgi-bin/hgBlat?command=startblat