RCI

Description

Side-chain RCI webserver predicts protein side-chain mobility by calculating the Side-Chain Random Coil Index from side-chain chemical shifts and predicting per-residue RMSD of NMR and MD ensembles as well as fractional accessible surface area of protein residues from the Random Coil Index.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of rci and load default version of rci as

module avail rci/ # list available modules
module load rci   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail rci

and choose explicit version you want to use.

Documentation

http://www.randomcoilindex.ca/cgi-bin/side_chain_rci_cgi_current.py