InteMAP

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Description

InteMAP (Integrated Metagenomic Assembly Pipeline) is a pipeline which integrates individual assemblers for assembling metagenomic short sequencing reads. By integrating three assemblers IDBA_UD, ABySS, and CABOG, InteMAP takes advantage of their strengths on assembling species with special sequencing coverage depths, and generates a high quality assembly.InteMAPis suitable for unix-like system with gcc and python installed.

Availability

version 1.0

Use

module add intemap-1.0

This makes available the path to the program binaries.

Documentation

http://cqb.pku.edu.cn/ZhuLab/InteMAP/Manual.pdf


Licence

Program manager

meta@cesnet.cz

Homepage

http://cqb.pku.edu.cn/ZhuLab/InteMAP/index.html