BFC

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Description

BFC is a free, fast and easy-to-use sequencing error corrector designed for Illumina short reads. It uses a non-greedy algorithm but still maintains a speed comparable to implementations based on greedy methods.

Licence

Public

Use

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of bfc and load default version of bfc as

module avail bfc/ # list available modules
module load bfc   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail bfc

and choose explicit version you want to use.

Documentation

https://github.com/lh3/bfc

Homepage

https://github.com/lh3/bfc