Newick Utilities
Description
The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).
License
BSD License
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of newick-utils and load default version of newick-utils as
module avail newick-utils/ # list available modules module load newick-utils # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail newick-utils
and choose explicit version you want to use.
Utilities: nw_clade nw_distance nw_gen nw_match nw_rename nw_support nw_condense nw_duration nw_indent nw_order nw_reroot nw_topology nw_display nw_ed nw_labels nw_prune nw_stats nw_trim
Documentation
http://cegg.unige.ch/pub/nwutils_tutorial-1.6.pdf