Newick Utilities

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Description

The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).

Availability

Application is available in version 13042016 (newest version up to June 2017) and 1.6

Use

module add newick-utils-13042016 module add newick-utils-1.6

Utilities: nw_clade nw_distance nw_gen nw_match nw_rename nw_support nw_condense nw_duration nw_indent nw_order nw_reroot nw_topology nw_display nw_ed nw_labels nw_prune nw_stats nw_trim

License

BSD License

Documentation

http://cegg.unige.ch/pub/nwutils_tutorial-1.6.pdf

Program manager

meta@cesnet.cz

Homepage

URL: http://cegg.unige.ch/newick_utils