HAPCUT2

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Description

HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read technologies or protocols, with slow or inaccurate performance on others

Usage

module avail hapcut2/ # list available modules
module load hapcut2   # load (default) module

Documentation

https://github.com/vibansal/hapcut2

Homepage

https://github.com/vibansal/hapcut2