RSeQC

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Description

RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc.

Availability

Versions:

  • 2.6.1 (module RSeQC-2.6.1)

Use

Load module:

$ module add RSeQC-2.6.1

After it you can type: python -c ‘from qcmodule import SAM’. If no error message comes out, RSeQC modules have been installed successfully.

Documentation

Licence

GNU GPL 3

Program administrator

Homepage

URL: RSeQC: An RNA-seq Quality Control Package