ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads.
Freely available to users. Modules:
abyss-1.9.0 abyss-2.1.0 abyss-2.1.5
module add abyss-2.1.5 abys-pe
abyss-pe np=8 #without mpi
Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page How to compute/Parallelization.
module add openmpi-2.1.1-intel #module add openmpi-2.1.1-gcc mpirun -np 8 ABYSS-P --help
Version 2.1.5 was compiled with openmpi-3.1.2-gcc!
GNU GPL v3