MITObim

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Description

The MITObim procedure (mitochondrial baiting and iterative mapping) represents a highly efficient approach to assembling novel mitochondrial genomes of non-model organisms directly from total genomic DNA derived NGS reads. Labor intensive long-range PCR steps prior to sequencing are no longer required. MITObim is capable of reconstructing mitochondrial genomes without the need of a reference genome of the targeted species by relying solely on (a) mitochondrial genome information of more distantly related taxa or (b) short mitochondrial barcoding sequences (seeds), such as the commonly used cytochrome-oxidase subunit 1 (COI), as a starting reference.

Category

Molecular phylogenetics

Availability

Versions 1.9

Licence

MIT Licence - Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software

Use

module add mitobim-1.9

Documentation

https://academic.oup.com/nar/article/41/13/e129/1129833

Homepage

https://github.com/chrishah/MITObim

Program manager

meta@cesnet.cz

Creator

Copyright (c) 2012 Christoph Hahn