Flexbar

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Description

The program Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases read mapping rates and improves genome as well as transcriptome assemblies. It supports next-generation sequencing data in fasta and fastq format, e.g. from Roche 454 and the Illumina platform.

License

BSD 3-Clause License

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of flexbar and load default version of flexbar as

module avail flexbar/ # list available modules
module load flexbar   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail flexbar

and choose explicit version you want to use.

Documentation

https://github.com/seqan/flexbar/wiki

Homepage

https://github.com/seqan/flexbar