CLCbio Genomics Workbench

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Description

The CLCbio Genomics Workbench, for analyzing and visualizing next generation sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow. It enables everyone to rapidly analyze and visualize the huge amounts of data generated by NGS machines. The user-friendly and intuitive interface essentially takes High-Throughput Analysis away from hardcore bioinformatics programmers doing command-line scripts, and hands it to scientists searching for biological results. Furthermore, the versatile nature of CLC Genomics Workbench allows it to blend seamlessly into existing sequencing analysis workflows, easing an implementation.

Availability

CLCbio Genomics Workbench version 9.5.3: module CLCgenomicsWB-9.5.3

  • upgrade of a license purchased by Centre CERIT-SC (available for all the MetaVO users) allowing 2 simultaneous runs of the application
  • equipped with a set of available extensions

CLCbio Genomics Workbench version 7.0: module CLCgenomicsWB-7.0

  • upgrade of a license purchased by Centre CERIT-SC (available for all the MetaVO users) allowing 2 simultaneous runs of the application
  • equipped with a set of available extensions

CLCbio Genomics Workbench version 6.5.1: module CLCgenomicsWB-6.5

  • a license purchased by Centre CERIT-SC (available for all the MetaVO users) allowing 2 simultaneous runs of the application
  • equipped with a set of available extensions

Use

Important: When requesting a job that will use the application, do not forget to ask the scheduler for starting the job when an application license is available, i.e., submit the job with e.g. qsub -l nodes=1:ppn=X:... -l clcgenomics=1 when requesting a single license to be available.

Load the appropriate module and run the CLCbio Genomics Workbench application. The application requires a graphical interface available.

$ module add CLCgenomicsWB-9.5.3
$ clcgenomicswb9

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

Documentation is available on the official producer's webpage or locally in the program directory (/software/clcgenomicswb/v9.5.3/doc/, /software/clcgenomicswb/v7.0/doc/ or /software/clcgenomicswb/v6.5/doc/)

Program administrator

  • Tomáš Rebok (meta at cesnet.cz)

Homepage

URL: http://www.clcbio.com/